Repro spurious DoesNotExistError #104
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| name: Repro spurious DoesNotExistError | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| uri: | |
| description: S3 URI to check | |
| default: s3://cellxgene-census-public-us-west-2/cell-census/2024-07-01/soma/census_data/homo_sapiens/ms/RNA/X/raw | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_REGION: us-west-2 | |
| jobs: | |
| job: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| tdbs-version: [ "1.14.5", "1.15.0rc4" ] | |
| runs-on: [ "ubuntu-latest" ] | |
| python-version: [ "3.9.19", "3.11.8" ] | |
| name: ${{ matrix.tdbs-version }} ${{ matrix.python-version }} ${{ matrix.runs-on }} | |
| runs-on: ${{ matrix.runs-on }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: pip install tiledbsoma==${{ matrix.tdbs-version }} | |
| - run: python -c 'tiledbsoma.show_package_versions()' | |
| - name: Test "aws s3 ls" | |
| run: aws s3 ls ${{ inputs.uri }} | |
| - name: Test tiledbsoma.open | |
| run: | | |
| cat open.py | |
| python open.py ${{ inputs.uri }} | |
| - name: Test Experiment.open | |
| run: | | |
| cat exp-open.py | |
| python exp-open.py ${{ inputs.uri }} |