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Issues list

squidpy (non-graph) spatial statistics for multiple images
#917 opened Nov 26, 2024 by mezwick
@giovp
Numba njit warning (nopython is set for njit and is ignored)
#916 opened Nov 25, 2024 by BenCaiello
@michalk8
Delegate plots to spatialdata-plot
#912 opened Nov 8, 2024 by LucaMarconato
4
Add parameter to sliding_window to end up with windows of (approximately) same number of cells enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#908 opened Nov 4, 2024 by timtreis
2
Visium observation with NaN metadata
#906 opened Oct 30, 2024 by jychien
@michalk8
1
Extend monkeybread neighbourhood to include n>1 cells enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#905 opened Oct 29, 2024 by timtreis
1
Add SpaGFT-like method for identification of SVGs enhancement ✨ New feature or request graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#901 opened Oct 15, 2024 by timtreis
@LLehner
How to draw co_occurrence plot with specific distance in x-axis?
#899 opened Oct 11, 2024 by Zhaowado
@giovp
CosMx FOVs being skipped
#894 opened Oct 2, 2024 by jamesboot
@michalk8
1
Mapping of Xenium 5k data I/O 💿
#889 opened Sep 18, 2024 by shanggutianzhen
@timtreis
5
Edge correction in squidpy.gr.ripley? enhancement ✨ New feature or request graph 🕸️
#886 opened Sep 13, 2024 by zsfrbkv
@giovp
1
[doc improvment] inconsistent usage of img_key and img_res_key in code base doc Improvements or additions to documentation
#884 opened Sep 3, 2024 by TTTPOB
1
Add SpatialLeiden as clustering method enhancement ✨ New feature or request graph 🕸️
#879 opened Aug 26, 2024 by timtreis
@LLehner
Infer parameters in sq.gr.spatial_neighbors when only one choice enhancement ✨ New feature or request graph 🕸️ sdata compat 🌌
#876 opened Aug 21, 2024 by timtreis
@timtreis
1
Catch-all: XYZ doesn't work with SpatialData enhancement ✨ New feature or request sdata compat 🌌 squidpy2.0 Everything releated to a Squidpy 2.0 release
#875 opened Aug 20, 2024 by timtreis
@timtreis
4
Import from QuPath or CODEX Dataset question ❓ Further information is requested
#872 opened Aug 12, 2024 by andreevg04
@giovp
1
Ligand-receptor plot always report Error bug 🐛 Something isn't working
#871 opened Aug 9, 2024 by ryrl970311
@michalk8
5
sq.gr.ripley() cost too much memory enhancement ✨ New feature or request graph 🕸️ speed up 🏃
#870 opened Aug 9, 2024 by wangjiawen2013
@michalk8
1
No matching definition for argument type
#867 opened Aug 8, 2024 by wangjiawen2013
@michalk8
3
Working on 3D segmentation matrix image 🔬 question ❓ Further information is requested
#861 opened Jul 29, 2024 by rsemeraro
@giovp
2
Invalid RGBA argument when use sq.pl.co_occurrence plot 🌺 related to plotting
#855 opened Jul 23, 2024 by Donbbit
@giovp
1
Image analysis functionality enhancement ✨ New feature or request image 🔬 squidpy2.0 Everything releated to a Squidpy 2.0 release
#850 opened Jul 10, 2024 by timtreis
squidpy.im.ImageContainer cannot process some pyramid tiff (with z > 1) image 🔬 sdata compat 🌌
#848 opened Jul 8, 2024 by gdurif
@michalk8
2
obsm (spatial, spatial_fov) size seems unreasonably large. question ❓ Further information is requested
#846 opened Jun 26, 2024 by JonatanSahar
@michalk8
1
UnidentifiedImageError when reading in Nanostring CosMx Data I/O 💿
#845 opened Jun 26, 2024 by keiven-kun
@giovp
2
ProTip! no:milestone will show everything without a milestone.