not producing any output file even after waiting for 3 hour

[Shaileshdesai76]

Hello
i am running rfmix and provided the below code and required file, however it look everything was working fine, however, there was no output even after 3 hours waiting .

shailesh@shailesh-HP:/media/shailesh/Drive/sd2$ rfmix -f Sdi_Phased_Sample.vcf.gz.vcf -r Sdai_Phased.vcf.vcf -m Sdasli_Sample_map.txt -g Sdasr_cms.map -o oufile --chromosome=1

RFMIX v2.03-r0 - Local Ancestry and Admixture Inference
(c) 2016, 2017 Mark Koni Hamilton Wright
Bustamante Lab - Stanford University School of Medicine
Based on concepts developed in RFMIX v1 by Brian Keith Maples, et al.

This version is licensed for non-commercial academic research use only
For commercial licensing, please contact [email protected]

--- For use in scientific publications please cite original publication ---
Brian Maples, Simon Gravel, Eimear E. Kenny, and Carlos D. Bustamante (2013).
RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry
Inference. Am. J. Hum. Genet. 93, 278-288

Loading genetic map for chromosome 1 ... done
Mapping samples ... 476 samples combined
Scanning input VCFs for common SNPs on chromosome 1 ... 20459 SNPs
Loading haplotypes... done
Defining and initializing conditional random field...
setting up CRF points and random forest windows...
computing random forest window spacing overlay...
initializing apriori reference subpop across CRF...
setting up random forest probability estimation arrays... done
Defining and initializing conditional random field... done
4968575 (25.5%) variant alleles 0 (0.0%) missing alleles

Generating internal simulation samples... ^C

[LiuYunjia]

Hi, have you solved this problem?

[Shaileshdesai76]

Actually not at that time, however since then I haven't tried to run.

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On Tue, Aug 6, 2024, 8:43 PM Yunjia_Liu ***@***.***> wrote: Hi, have you solved this problem? — Reply to this email directly, view it on GitHub <#46 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AW543BZHN5G3MVNNNM6X7ETZQDR3FAVCNFSM6AAAAAAY2QFZ36VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENZRGUZTQNRXHA> . You are receiving this because you authored the thread.Message ID: ***@***.***>