fix: update gffults & qc (#69)

* update gffults & qc * fix indentationg of rule multiqc wrapper version spec line * fix: biomart race conditions should be fixed in newer versions via grimbough/biomaRt@94a1f92 --------- Co-authored-by: Ubuntu <[email protected]> Co-authored-by: David Laehnemann <[email protected]>
snakemake-workflows · Oct 24, 2023 · 846693f · 846693f
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commit 846693f
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diff --git a/workflow/envs/biomart.yaml b/workflow/envs/biomart.yaml
@@ -3,5 +3,5 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - bioconductor-biomart =2.54
-  - r-tidyverse =1.3
+  - bioconductor-biomart =2.56
+  - r-tidyverse =2.0
diff --git a/workflow/envs/gffutils.yaml b/workflow/envs/gffutils.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - gffutils =0.11
+  - gffutils =0.12
diff --git a/workflow/rules/qc.smk b/workflow/rules/qc.smk
@@ -193,4 +193,4 @@ rule multiqc:
     log:
         "logs/multiqc.log",
     wrapper:
-        "v1.21.4/bio/multiqc"
+        "v2.7.0/bio/multiqc"