release/v1.2.3: updating version numbers

stan-dev · Jun 3, 2024 · 48a3e90 · 48a3e90
1 parent 9ac8fe7
commit 48a3e90
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Showing 47 changed files with 957 additions and 1,089 deletions.
diff --git a/cmdstanpy/_version.py b/cmdstanpy/_version.py
@@ -1,3 +1,3 @@
 """PyPi Version"""
 
-__version__ = '1.2.2'
+__version__ = '1.2.3'
diff --git a/docs/_modules/cmdstanpy/cmdstan_args.html b/docs/_modules/cmdstanpy/cmdstan_args.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.cmdstan_args &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.cmdstan_args &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/compilation.html b/docs/_modules/cmdstanpy/compilation.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.compilation &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.compilation &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/model.html b/docs/_modules/cmdstanpy/model.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.model &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.model &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit.html b/docs/_modules/cmdstanpy/stanfit.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit/gq.html b/docs/_modules/cmdstanpy/stanfit/gq.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit.gq &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit.gq &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit/laplace.html b/docs/_modules/cmdstanpy/stanfit/laplace.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit.laplace &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit.laplace &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit/mcmc.html b/docs/_modules/cmdstanpy/stanfit/mcmc.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit.mcmc &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit.mcmc &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit/metadata.html b/docs/_modules/cmdstanpy/stanfit/metadata.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit.metadata &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit.metadata &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit/mle.html b/docs/_modules/cmdstanpy/stanfit/mle.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit.mle &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit.mle &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 

diff --git a/docs/_modules/cmdstanpy/stanfit/pathfinder.html b/docs/_modules/cmdstanpy/stanfit/pathfinder.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cmdstanpy.stanfit.pathfinder &#8212; CmdStanPy 1.2.2 documentation</title>
+    <title>cmdstanpy.stanfit.pathfinder &#8212; CmdStanPy 1.2.3 documentation</title>
 
     <link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
 <link href="../../../_static/styles/pydata-sphinx-theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
@@ -61,7 +61,7 @@
   <div id="navbar-start">
 
     <!-- This will display the version of the docs -->
-<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.2</a>
+<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.2.3</a>
 
   </div>
 
@@ -388,8 +388,10 @@ <h1>Source code for cmdstanpy.stanfit.pathfinder</h1><div class="highlight"><pre
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="p">(</span>  <span class="c1"># type: ignore</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">cmdstan_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;num_paths&quot;</span><span class="p">,</span> <span class="mi">4</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span>
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">cmdstan_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;psis_resample&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">cmdstan_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;calculate_lp&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
+            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">cmdstan_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;psis_resample&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+            <span class="ow">in</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s1">&#39;true&#39;</span><span class="p">)</span>
+            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_metadata</span><span class="o">.</span><span class="n">cmdstan_config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;calculate_lp&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+            <span class="ow">in</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s1">&#39;true&#39;</span><span class="p">)</span>
         <span class="p">)</span>
 
 <div class="viewcode-block" id="CmdStanPathfinder.save_csvfiles"><a class="viewcode-back" href="../../../api.html#cmdstanpy.CmdStanPathfinder.save_csvfiles">[docs]</a>    <span class="k">def</span> <span class="nf">save_csvfiles</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">dir</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>