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release/v1.1.0rc1: updating version numbers
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github-actions[bot] committed Jan 18, 2023
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2 changes: 1 addition & 1 deletion cmdstanpy/_version.py
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"""PyPi Version"""

__version__ = '1.0.8'
__version__ = '1.1.0rc1'
42 changes: 21 additions & 21 deletions docs/_modules/cmdstanpy/cmdstan_args.html
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32 changes: 16 additions & 16 deletions docs/_modules/cmdstanpy/compiler_opts.html
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268 changes: 189 additions & 79 deletions docs/_modules/cmdstanpy/model.html
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6 changes: 3 additions & 3 deletions docs/_modules/cmdstanpy/stanfit.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>cmdstanpy.stanfit &#8212; CmdStanPy 1.0.8 documentation</title>
<title>cmdstanpy.stanfit &#8212; CmdStanPy 1.1.0rc1 documentation</title>

<!-- Loaded before other Sphinx assets -->
<link href="../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
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<div id="navbar-start">

<!-- This will display the version of the docs -->
<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.0.8</a>
<a class='navbar-brand' href='../../index.html'>CmdStanPy 1.1.0rc1</a>

</div>

Expand Down Expand Up @@ -202,7 +202,7 @@ <h1>Source code for cmdstanpy.stanfit</h1><div class="highlight"><pre>
<span class="n">path</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span> <span class="n">os</span><span class="o">.</span><span class="n">PathLike</span><span class="p">,</span> <span class="kc">None</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
<span class="n">method</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="n">CmdStanMCMC</span><span class="p">,</span> <span class="n">CmdStanMLE</span><span class="p">,</span> <span class="n">CmdStanVB</span><span class="p">,</span> <span class="kc">None</span><span class="p">]:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Instantiate a CmdStan object from a the Stan CSV files from a CmdStan run.</span>
<span class="sd"> CSV files are specified from either a list of Stan CSV files or a single</span>
<span class="sd"> filepath which can be either a directory name, a Stan CSV filename, or</span>
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18 changes: 9 additions & 9 deletions docs/_modules/cmdstanpy/stanfit/metadata.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>cmdstanpy.stanfit.metadata &#8212; CmdStanPy 1.0.8 documentation</title>
<title>cmdstanpy.stanfit.metadata &#8212; CmdStanPy 1.1.0rc1 documentation</title>

<!-- Loaded before other Sphinx assets -->
<link href="../../../_static/styles/theme.css?digest=1999514e3f237ded88cf" rel="stylesheet">
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<div id="navbar-start">

<!-- This will display the version of the docs -->
<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.0.8</a>
<a class='navbar-brand' href='../../../index.html'>CmdStanPy 1.1.0rc1</a>

</div>

Expand Down Expand Up @@ -176,14 +176,14 @@ <h1>Source code for cmdstanpy.stanfit.metadata</h1><div class="highlight"><pre>


<div class="viewcode-block" id="InferenceMetadata"><a class="viewcode-back" href="../../../internal_api.html#cmdstanpy.InferenceMetadata">[docs]</a><span class="k">class</span> <span class="nc">InferenceMetadata</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> CmdStan configuration and contents of output file parsed out of</span>
<span class="sd"> the Stan CSV file header comments and column headers.</span>
<span class="sd"> Assumes valid CSV files.</span>
<span class="sd"> &quot;&quot;&quot;</span>

<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">config</span><span class="p">:</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Initialize object from CSV headers&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Initialize object from CSV headers&quot;&quot;&quot;</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_cmdstan_config</span> <span class="o">=</span> <span class="n">config</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_method_vars_cols</span> <span class="o">=</span> <span class="n">parse_method_vars</span><span class="p">(</span><span class="n">names</span><span class="o">=</span><span class="n">config</span><span class="p">[</span><span class="s1">&#39;column_names&#39;</span><span class="p">])</span>
<span class="n">stan_vars_dims</span><span class="p">,</span> <span class="n">stan_vars_cols</span><span class="p">,</span> <span class="n">stan_vars_types</span> <span class="o">=</span> <span class="n">parse_stan_vars</span><span class="p">(</span>
Expand All @@ -198,7 +198,7 @@ <h1>Source code for cmdstanpy.stanfit.metadata</h1><div class="highlight"><pre>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">cmdstan_config</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns a dictionary containing a set of name, value pairs</span>
<span class="sd"> parsed out of the Stan CSV file header. These include the</span>
<span class="sd"> command configuration and the CSV file header row information.</span>
Expand All @@ -208,7 +208,7 @@ <h1>Source code for cmdstanpy.stanfit.metadata</h1><div class="highlight"><pre>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">method_vars_cols</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="o">...</span><span class="p">]]:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns a map from a Stan inference method variable to</span>
<span class="sd"> a tuple of column indices in inference engine&#39;s output array.</span>
<span class="sd"> Method variable names always end in `__`, e.g. `lp__`.</span>
Expand All @@ -218,7 +218,7 @@ <h1>Source code for cmdstanpy.stanfit.metadata</h1><div class="highlight"><pre>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">stan_vars_cols</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="o">...</span><span class="p">]]:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns a map from a Stan program variable name to a</span>
<span class="sd"> tuple of the column indices in the vector or matrix of</span>
<span class="sd"> estimates produced by a CmdStan inference method.</span>
Expand All @@ -228,7 +228,7 @@ <h1>Source code for cmdstanpy.stanfit.metadata</h1><div class="highlight"><pre>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">stan_vars_dims</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="o">...</span><span class="p">]]:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns map from Stan program variable names to variable dimensions.</span>
<span class="sd"> Scalar types are mapped to the empty tuple, e.g.,</span>
<span class="sd"> program variable ``int foo`` has dimension ``()`` and</span>
Expand All @@ -239,7 +239,7 @@ <h1>Source code for cmdstanpy.stanfit.metadata</h1><div class="highlight"><pre>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">stan_vars_types</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">BaseType</span><span class="p">]:</span>
<span class="sd">&quot;&quot;&quot;</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns map from Stan program variable names to variable base type.</span>
<span class="sd"> Uses deepcopy for immutability.</span>
<span class="sd"> &quot;&quot;&quot;</span>
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