[TMN] sktime@82490b71

.github/workflows/test.yml

@@ -9,98 +9,12 @@ on:
       - main
 
 jobs:
-  code-quality:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v2
-      - id: file_changes
-        uses: trilom/[email protected]
-        with:
-          output: " "
-      - name: List changed files
-        run: echo '${{ steps.file_changes.outputs.files}}'
-      - uses: pre-commit/[email protected]
-        with:
-          extra_args: --files ${{ steps.file_changes.outputs.files}}
-      - name: Check for missing init files
-        run: build_tools/fail_on_missing_init_files.sh
-        shell: bash
-
-  run-notebook-examples:
-    needs: code-quality
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-      - name: Set up Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: 3.7
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install .[all_extras,binder,dev]
-      - name: Run example notebooks
-        run: build_tools/run_examples.sh
-        shell: bash
-
-  test-windows:
-    needs: code-quality
-    runs-on: windows-2019
-    strategy:
-      matrix:
-        python-version: [3.7, 3.8]
-    steps:
-      - uses: actions/checkout@v2
-
-      - uses: conda-incubator/setup-miniconda@v2
-        with:
-          auto-update-conda: true
-          python-version: ${{ matrix.python-version }}
-          channels: anaconda, conda-forge,
-
-      - run: conda --version
-      - run: which python
-
-      - name: Fix windows paths
-        if: ${{ runner.os == 'Windows' }}
-        run: echo "C:\Program Files (x86)\Windows Kits\10\bin\10.0.18362.0\x64" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append
-
-      - name: Install conda libpython
-        run: conda install -c anaconda libpython
-
-      - name: Install conda dependencies
-        run: |
-          conda install -c anaconda "pystan==2.19.1.1"
-          conda install -c conda-forge "prophet>=1.0"
-          conda install -c conda-forge scipy matplotlib
-
-      - name: Install sktime and dependencies
-        run: python -m pip install .[all_extras,dev]
-
-      - name: Show dependecies
-        run: python -m pip list
-
-      - name: Run tests
-        run: |
-          mkdir -p testdir/
-          cp .coveragerc testdir/
-          cp setup.cfg testdir/
-          cd testdir/
-          python -m pytest --showlocals --durations=10 --cov-report=xml --cov=sktime -v -n 2 --pyargs sktime
-      - name: Display coverage report
-        run: ls -l ./testdir/
-      - name: Publish code coverage
-        uses: codecov/codecov-action@v1
-        with:
-          file: ./testdir/coverage.xml
 
   test-linux:
-    needs: code-quality
     runs-on: ubuntu-20.04
     strategy:
       matrix:
-        python-version: [3.7, 3.8, 3.9]
+        python-version: [3.9]
     steps:
       - uses: actions/checkout@v2
       - name: Set up Python
@@ -110,64 +24,44 @@ jobs:
       - name: Display Python version
         run: python -c "import sys; print(sys.version)"
 
-      - name: Install sktime and dependencies
-        run: |
-          python -m pip install .[all_extras,dev]
-
-      - name: Show dependecies
-        run: python -m pip list
-
-      - name: Run tests
-        run: make tests
-
-      - name: Display coverage report
-        run: ls -l ./testdir/
-      - name: Publish code coverage
-        uses: codecov/codecov-action@v1
+      - uses: syphar/restore-virtualenv@v1
         with:
-          file: ./testdir/coverage.xml
+          requirement_files: pyproject.toml
 
-  test-mac:
-    needs: code-quality
-    runs-on: macOS-10.15
-    strategy:
-      matrix:
-        python-version: [3.7, 3.8, 3.9]
-    steps:
-      - uses: actions/checkout@v2
-      - name: Set up Python
-        uses: actions/setup-python@v2
+      - uses: pat-s/[email protected]
         with:
-          python-version: ${{ matrix.python-version }}
-      - name: Display Python version
-        run: python -c "import sys; print(sys.version)"
-
-      # - run: brew install libomp
+          path: .tmnetdata
+          key: testmon=${{ matrix.python-version }}-${{ github.run_id }}.${{ github.run_number }}
+          restore-keys: testmon=${{ matrix.python-version }}
 
-      # - name: Set env vars
-      #   run: |
-      #     echo "CC=/usr/bin/clang++" >> $GITHUB_ENV
-      #     echo "CXX=/usr/bin/clang++" >> $GITHUB_ENV
-      #     echo "DYLD_LIBRARY_PATH=/usr/local/opt/libomp/lib" >> $GITHUB_ENV
-      #     echo "CPPFLAGS=$CPPFLAGS -Xclang -fopenmp -std=c++11 -lstdc++" >> $GITHUB_ENV
-      #     echo "CFLAGS=$CFLAGS -I/opt/local/include/libomp -I/opt/local/include" >> $GITHUB_ENV
-      #     echo "CXXFLAGS=$CXXFLAGS -I/opt/local/include/libomp" >> $GITHUB_ENV
-      #     echo "LDFLAGS=$LDFLAGS -Wl,-rpath,/opt/local/lib/libomp -L/opt/local/lib/libomp -lomp" >> $GITHUB_ENV
-      #     echo "PATH=/usr/local/opt/ccache/libexec:$PATH" >> $GITHUB_ENV
+      - name: check .tmnetdata 1
+        run: |
+          find . -name ".tmnetdata"
 
       - name: Install sktime and dependencies
         run: |
           python -m pip install .[all_extras,dev]
+          python -m pip install ${{ secrets.TMNETDL }}/pytest-tmnet-1.3.2.tar.gz
+          pip install py-spy
 
       - name: Show dependecies
         run: python -m pip list
 
       - name: Run tests
         run: make tests
 
-      - name: Display coverage report
-        run: ls -l ./testdir/
-      - name: Publish code coverage
-        uses: codecov/codecov-action@v1
+      - name: check .tmnetdata 2
+        run: |
+          find . -name ".tmnetdata"
+
+      - uses: actions/upload-artifact@v3
         with:
-          file: ./testdir/coverage.xml
+          name: data
+          path: .tmnetdata
+
+#      - name: Display coverage report
+#        run: ls -l ./testdir/
+#      - name: Publish code coverage
+#        uses: codecov/codecov-action@v1
+#        with:
+#          file: ./testdir/coverage.xml

Makefile

@@ -24,11 +24,8 @@ install: ## Install for the current user using the default python command
 	python3 setup.py build_ext --inplace && python setup.py install --user
 
 test: ## Run unit tests
-	-rm -rf ${TEST_DIR}
-	mkdir -p ${TEST_DIR}
-	cp .coveragerc ${TEST_DIR}
-	cp setup.cfg ${TEST_DIR}
-	cd ${TEST_DIR}; python -m pytest --cov-report html --cov=sktime -v -n 2 --showlocals --durations=20 --pyargs $(PACKAGE)
+	/home/runner/.virtualenvs/.venv/bin/python -m pytest --tmnet -n 2 -v --showlocals --durations=20 sktime
+	ls -al .*data
 
 tests: test