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Add support for comment and label manifests.
Introduces `.MANIFEST` files to comment and label directories to keep track of sub-resources when the PullRequest resource is initialized. This allows us to keep track of what resources the user explicitly deleted, and not accidentally overwrite new comments/lables that were introduced during execution. Minor changes included: * Changed fake GitHub server to make copies of PullRequests to avoid pointer collision across tests. * Changed uploadLabels to Add/Delete labels explicitly instead of replacing all. Change manifest path to .MANIFEST to avoid collisions. Fixes #1286
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