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Hdf5 and database restructuring #201

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merged 9 commits into from
Feb 21, 2019
Merged

Hdf5 and database restructuring #201

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65eefee
Not working attempt on hdf5 database
Aug 28, 2018
0242c45
Merge branch 'master' of https://github.com/thouska/spotpy into hdf5
Feb 18, 2019
05f6428
Made database.py package from the single module and repaired
Feb 18, 2019
ea747f6
Updated tests fixed errors found by tests
Feb 18, 2019
d6a4aeb
Removed harmful waiting for user input in csv.py and sql.py
Feb 18, 2019
9b05afa
Fixed automatic inspection of datawriters without importing them all
Feb 18, 2019
d2c60b8
Added pytables as a dependency for travis
philippkraft Feb 19, 2019
8a38536
pip install tables, not pytables
philippkraft Feb 19, 2019
b913ee7
Changed name listing in spotpy.database.__init__
philippkraft Feb 19, 2019
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1 change: 1 addition & 0 deletions .travis.yml
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Expand Up @@ -19,6 +19,7 @@ install:
# Use docutils to generate html describe
- pip install docutils
- pip install numba
- pip install tables


script:
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2 changes: 1 addition & 1 deletion spotpy/cli.py
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Expand Up @@ -54,7 +54,7 @@ def cli():
@click.pass_context
@click.option('--sampler', '-s', type=make_type_from_module(algorithms), default='mc',
help='Select the spotpy sampler')
@click.option('--dbformat', type=make_type_from_module(database, 'Pick'), default='ram',
@click.option('--dbformat', type=click.Choice(database.__dir__()), default='ram',
help='The type of the database')
@click.option('--dbname', type=click.STRING, help='The name of the database, leave open for ram')
@click.option('--parallel', '-p', type=click.Choice(['seq', 'mpc', 'mpi']), default='seq',
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355 changes: 0 additions & 355 deletions spotpy/database.py
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