Skip to content

Commit

Permalink
Fixing high variance classification mess (ME-ICA#34)
Browse files Browse the repository at this point in the history
* Added dec_reclassify_high_var_comps plus

* clarified diff btwn rho_kundu and _liberal thresh

* Clarified docs for minimal tree
  • Loading branch information
handwerkerd authored Mar 15, 2023
1 parent 2e45e8d commit 8acf185
Show file tree
Hide file tree
Showing 9 changed files with 391 additions and 393 deletions.
10 changes: 7 additions & 3 deletions docs/faq.rst
Original file line number Diff line number Diff line change
Expand Up @@ -125,9 +125,13 @@ removed this way.
range of datasets, but the primary benefit is that it is possible to describe what it does
in a short paragraph. The minimal tree will retain some components that kundu
appropriately classifies as noise, and it will reject some components that kundu
accepts. On balance, we expect it to be a more conservative option that should not
remove noise as aggressively as kundu, but will be less likely to reject components that
clearly contain signal-of-interest.
accepts. The goal for the minimal tree is to be a more conservative option that
will be less likely to reject components that clearly contain signal-of-interest, but
this has not yet been validated. The precise thresholds and steps in the minimal
tree may change as the results from running it are examined on a wider range of data.
The developers are looking for more people to compare results between the kundu and
minimal trees, but if someone values stability when processing a large dataset,
the minimal tree might not be the best option until it is tested and validated more.

It is also possible for users to view both decision trees and `make their own`_.
This might be useful for general methods development and also for using ``tedana``
Expand Down
267 changes: 0 additions & 267 deletions tedana/resources/decision_trees/invalid_kundu_bkup.json

This file was deleted.

Loading

0 comments on commit 8acf185

Please sign in to comment.