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AWS for Bioinformatics Researchers

Jupyter Notebook 130 34 Updated Aug 22, 2024

A vagrant project with an ubuntu box with the tools needed to do DevOps

Shell 166 390 Updated Jul 4, 2023

Kubernetes Course Files

Go 1,703 2,597 Updated Mar 17, 2023

Shiny App to perform NCA on (pre-)clinical data

R 15 Updated Jan 17, 2025

Config files used to define parameters specific to compute environments at different Institutions

Nextflow 91 282 Updated Jan 17, 2025

An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.

Julia 35 3 Updated Nov 19, 2024

RNA-seq workflow using STAR and DESeq2

Python 332 205 Updated Aug 1, 2024

This Snakemake pipeline implements the GATK best-practices workflow

Python 245 145 Updated Jun 8, 2023

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

R 56 14 Updated Feb 21, 2024

A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.

Python 73 20 Updated Aug 21, 2020
TypeScript 353 37 Updated Jan 19, 2025

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

HTML 70,724 14,882 Updated Jan 1, 2025

A platform to create documentation/wiki content built with PHP & Laravel

PHP 15,819 1,981 Updated Jan 18, 2025

Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown

TypeScript 74,525 6,822 Updated Jan 19, 2025

Minimal and clean examples of machine learning algorithms implementations

Python 10,770 1,777 Updated Mar 30, 2023

This repository is for the GitHub Actions 101 workshop that is taking place on the 22nd of November 2023. The repository should be forked by attendees who wish to code as they go during the workshop.

Python 1 15 Updated Nov 22, 2023

DAO project

R 3 Updated Feb 17, 2023

The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.

11,640 2,125 Updated Jan 8, 2025

Nextflow config builder scripts for supported HPC infrastructures.

Python 8 1 Updated Feb 8, 2024

A Python Package for Protein Dynamics Analysis

Python 443 158 Updated Dec 28, 2024

PEPPER-Margin-DeepVariant

Python 244 42 Updated Jan 12, 2024

Presentation-quality WebGL math graphing

JavaScript 1,355 110 Updated May 5, 2023

pandas on AWS - Easy integration with Athena, Glue, Redshift, Timestream, Neptune, OpenSearch, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (…

Python 3,965 706 Updated Jan 13, 2025
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