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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-11-24 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-11-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #488](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#488/) | ||
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| ## Get Data | ||
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| - copernicusmarine was updated to [c07f11d8e49a](https://toolshed.g2.bx.psu.edu/view/ecology/copernicusmarine/c07f11d8e49a) | ||
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| ## Metagenomic Analysis | ||
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| - krakentools_alpha_diversity was updated to [78b69342c280](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_alpha_diversity/78b69342c280) | ||
| - krakentools_beta_diversity was updated to [4505d7643673](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_beta_diversity/4505d7643673) | ||
| - krakentools_combine_kreports was updated to [3d2cffa2c4ab](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_combine_kreports/3d2cffa2c4ab) | ||
| - krakentools_extract_kraken_reads was updated to [4bf1e2701504](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_extract_kraken_reads/4bf1e2701504) | ||
| - krakentools_kreport2krona was updated to [02bbace216f2](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_kreport2krona/02bbace216f2) | ||
| - krakentools_kreport2mpa was updated to [d33cf727ed94](https://toolshed.g2.bx.psu.edu/view/iuc/krakentools_kreport2mpa/d33cf727ed94) | ||
| - checkv_build_database was updated to [88042a5ead89](https://toolshed.g2.bx.psu.edu/view/ufz/checkv_build_database/88042a5ead89) | ||
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| ## Data Managers | ||
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| - genomad_build_database was updated to [c4ec3d81eeee](https://toolshed.g2.bx.psu.edu/view/ufz/genomad_build_database/c4ec3d81eeee) | ||
| - vibrant_build_database was updated to [3f68072f2da6](https://toolshed.g2.bx.psu.edu/view/ufz/vibrant_build_database/3f68072f2da6) | ||
| - virsorter_build_database was updated to [863ba94fb6e4](https://toolshed.g2.bx.psu.edu/view/ufz/virsorter_build_database/863ba94fb6e4) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## fetch_sequences___alignments | ||
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| - extract_genomic_dna was updated to [80414c33a59a](https://toolshed.g2.bx.psu.edu/view/iuc/extract_genomic_dna/80414c33a59a) | ||
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| ## Assembly | ||
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| - blobtoolkit was updated to [392811378515](https://toolshed.g2.bx.psu.edu/view/bgruening/blobtoolkit/392811378515) | ||
| - abyss was updated to [db9b10824c61](https://toolshed.g2.bx.psu.edu/view/iuc/abyss/db9b10824c61) | ||
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| ## Machine Learning | ||
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| - black_forest_labs_flux was updated to [21ee409e6cde](https://toolshed.g2.bx.psu.edu/view/bgruening/black_forest_labs_flux/21ee409e6cde) | ||
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| ## Imaging | ||
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| - cp_cellprofiler4 was updated to [9799fc53433e](https://toolshed.g2.bx.psu.edu/view/bgruening/cp_cellprofiler4/9799fc53433e) | ||
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| ## FASTA/FASTQ | ||
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| - bbtools_bbduk was updated to [d58c27d2c5a7](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/d58c27d2c5a7) | ||
| - bbtools_bbmerge was updated to [1bb2b5b52030](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/1bb2b5b52030) | ||
| - bbtools_tadpole was updated to [ce13b4678f18](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/ce13b4678f18) | ||
| - ncbi_fcs_gx was updated to [32d058f3462a](https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_fcs_gx/32d058f3462a) | ||
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| ## Gemini | ||
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| - gemini_annotate was updated to [8da05bf2b1d1](https://toolshed.g2.bx.psu.edu/view/iuc/gemini_annotate/8da05bf2b1d1) | ||
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| ## Genome Diversity | ||
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| - fasttree was updated to [ef46a404db96](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/ef46a404db96) | ||
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| ## Mapping | ||
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| - bbtools_bbmap was updated to [8015d7ab8357](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmap/8015d7ab8357) | ||
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| ## Multiple Alignments | ||
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| - trimal was updated to [e379c0202766](https://toolshed.g2.bx.psu.edu/view/iuc/trimal/e379c0202766) | ||
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| ## Variant Calling | ||
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| - bbtools_callvariants was updated to [3854db061e6e](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_callvariants/3854db061e6e) | ||
| - ensembl_vep was updated to [c91e09b60325](https://toolshed.g2.bx.psu.edu/view/iuc/ensembl_vep/c91e09b60325) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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| ## RNA Analysis | ||
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| - infernal was updated to [3711f654044e](https://toolshed.g2.bx.psu.edu/view/bgruening/infernal/3711f654044e) | ||
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