run safe fixes, set ignored ruff violations

pyproject.toml

@@ -241,7 +241,19 @@ ignore = [
   "COM", # commas
   "D205", # blank-line-after-summary
   "D400", # ends-in-period
-  "D401" # non-imperative-mood
+  "D401", # non-imperative-mood
+  # The following ignore codes are disabled because the codebase is not yet compliant
+  "BLE001", # Do not catch blind exception: `Exception`
+  "PERF203", # `try`-`except` within a loop incurs performance overhead
+  "PTH100", # `os.path.abspath()` should be replaced by `Path.resolve()`
+  "PTH107", # `os.remove()` should be replaced by `Path.unlink()`
+  "PTH110", # ``os.path.exists()` should be replaced by `Path.exists()`
+  "PTH120", # `os.path.dirname()` should be replaced by `Path.parent`
+  "PTH123", # `open()` should be replaced by `Path.open()`
+  "RUF013", # PEP 484 prohibits implicit `Optional`
+  "S110", # `try`-`except`-`pass` detected, consider logging the exception
+  "UP006", # Use `list` instead of `List` for type annotation
+  "UP007" # Use `X | Y` for type annotations
 ]
 select = [
   "BLE", # blind-except

src/xncml/core.py

@@ -13,7 +13,7 @@
 import xmltodict
 
 
-class Dataset(object):
+class Dataset:
     """A class for reading and manipulating NcML file.
 
     Note that NcML documents are used for two distinct purposes:

src/xncml/generated/ncml_2_2.py

@@ -380,7 +380,7 @@ class Meta:
             "type": "Element",
         },
     )
-    variable: List["Variable"] = field(
+    variable: List[Variable] = field(
         default_factory=list,
         metadata={
             "type": "Element",
@@ -535,7 +535,7 @@ class Meta:
             ),
         },
     )
-    variable_agg: List["Aggregation.VariableAgg"] = field(
+    variable_agg: List[Aggregation.VariableAgg] = field(
         default_factory=list,
         metadata={
             "name": "variableAgg",
@@ -556,19 +556,19 @@ class Meta:
             "type": "Element",
         },
     )
-    netcdf: List["Netcdf"] = field(
+    netcdf: List[Netcdf] = field(
         default_factory=list,
         metadata={
             "type": "Element",
         },
     )
-    scan: List["Aggregation.Scan"] = field(
+    scan: List[Aggregation.Scan] = field(
         default_factory=list,
         metadata={
             "type": "Element",
         },
     )
-    scan_fmrc: List["Aggregation.ScanFmrc"] = field(
+    scan_fmrc: List[Aggregation.ScanFmrc] = field(
         default_factory=list,
         metadata={
             "name": "scanFmrc",

tests/test_parser.py

@@ -16,7 +16,7 @@
 data = Path(__file__).parent / "data"
 
 
-class CheckClose(object):
+class CheckClose:
     """Check that files are closed after the test. Note that `close` has to be explicitly called within the
     context manager for this to work.
     """