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Mzkit is an open source raw data file toolkit for mass spectrometry data analysis, provides by the BioNovoGene corporation. The features of mzkit inlcudes: raw data file content viewer(XIC/TIC/Mass spectrum plot), build molecule network, formula de-novo search and de-novo annotation.

This open source mass spectrometry data toolkit is developed at the BioDeep R&D laboratory and brought to you by BioNovoGene corporation.

Downloads: http://www.biodeep.cn/downloads?lang=en-US

This is a release update edition for PANOMIX spatial metabolism
Wish you peace and health on Chinese Dragon Boat Festival!

• new Enable mzkit for imports 10x genomics raw data file for do slide sample imaging
• new Enable mzkit for do ms-imaging slide sample rotation, just use the button [Rotate Slide] in MSI operations menu.
• new Add ion annotation table imports for ms-imaging viewer, this function required a csv table that contains the target ions' m/z, name, formula, precursor_type information.
• enhancement show physical ruler overlap in the ms-imaging render, you can turn off this overlap by set showPhysicalRuler option to false
• enhancement show total ions ms-imaging overlaps in the ms-imaging render, you can turn off this overlap by set showTotalIonOverlap option to false
• enhancement enable adjust the ion polarity mode for the ms-imaging data viewer, this option value will affects some ion metabolite annotation related function in mzkit ms-imaging data viewer
• enhancement add more ms-imaging related properties to displayed in ms-imaging viewer: resolution, physical size in unit mm, file type, etc.
• enhancement enable imports custom ion layer in the ion layer selector of the ms-imaging viewer, data imports could be comes from a csv or xlsx table file.
• enhancement Add tweaks of the parameters when do ms-imaging row scan raw data file combines
• fixed fix of the possible bug in the background R# script data backend when create the ms-imaging heatmap matrix
• enhancement enable set the color palette when create the ms-imaging heatmap matrix, you can just tweaks of this parameter in the [Settings] tab page on the ms-imaging heatmap matrix editor
• new Add a color scaler bar besides the ms-imaging viewer, you can adjust the intensity scaler range manually via this color scaler bar. This color scaler bar not working for the RGB ms-imaging render.
• new View ion m/z distribution histogram in ms-imaging viewer. You can found this option in [MSI Analysis] -> [Feature Detections] menu.
• new Add umap manifold + dbscan clustering for do slide sample auto-segmentation
• enhancement Now the umap 3d scatter viewer could interactive with the ms-imaging viewer: you can select the ms-imaging pixel spot via mouse click on the scatter point in umap 3d scatter viewer
• enhancement Enable the ms-imaging viewer imports the umap cluster dataset as the sample slide segmentation data source
• enhancement Add scatter size options for tweaks the point size when view the tissue segmentation result overlap with the ms-imaging
• update removes the biodeep login condition for the targetted metabolism data handler
• enhancement make improvements of the targetted metabolism data viewer: export targetted linear modelling report PDF
• enhancement Enable display the RGB ms-imaging renering plot by default when load plot data from the export cdf matrix file comes from the mzkit RGB ms-imging rendering result
• update Add options for group the un-tagged pixel spots in the ms-imging slide sample in the ms-imaging tissue sample region editor
• update Add option for view sample region MS1 spectrum in the ms-imaging tissue sample region editor, use the mouse right click to invoke this function
• update Add option for set custom color in html color code for the ms-imaging tissue sample region
• update Add function for load all annotated molecule layer from the ms-imaging raw data file, you can use this new function via mouse contex menu of the ion layer selector
• update Add batch export of the ms-imaging layer image via mouse contex menu of the ion layer selector
• new Add app plugin for view mzkit LCMS reference spectrum library data pack file, use this function by open plugin from [Plugin Manager] -> [Reference Library Viewer]
• new Add app plugin for access to the Spectrum cluster tree database, use this function by open plugin from [Plugin Manager] -> [Molecular Network Viewer Client]