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v0.1.5: Add text for stability and mutation count to the de novo signature plots #123

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merged 4 commits into from
May 17, 2024
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v0.1.5: Add text for stability and mutation count to the de novo signature plots #123

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3f81709
Update README.md
rvangara Mar 25, 2024
b1404e5
Update README.md
rvangara Mar 25, 2024
f552f52
v0.1.5: Add text for stability and mutation count to the de novo sign…
mdbarnesUCSD May 10, 2024
62472cf
Merge pull request #124 from AlexandrovLab/updates_links
mdbarnesUCSD May 15, 2024
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2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -161,7 +161,7 @@ Additional functionalities for downstream analysis of _de novo_ extraction of mu

## <a name="citation"></a> Citation

Díaz-Gay, M., Vangara, R., Barnes, M., ... & Alexandrov, L. B. (2023). Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment, bioRxiv, 2023-07. doi: https://doi.org/10.1101/2023.07.10.548264
Díaz-Gay, M., Vangara, R., Barnes, M., ... & Alexandrov, L. B. (2023). Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment, Bioinformatics, 2023-07. doi: [https://doi.org/10.1093/bioinformatics/btad756](https://doi.org/10.1093/bioinformatics/btad756)

## <a name="copyright"></a> Copyright
This software and its documentation are copyright 2022 as a part of the SigProfiler project. The SigProfilerAssignment framework is free software and is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
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2 changes: 2 additions & 0 deletions SigProfilerAssignment/decompose_subroutines.py
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Expand Up @@ -1448,6 +1448,8 @@ def make_final_solution(
solution_prefix,
m,
True,
custom_text_upper=signature_stabilities,
custom_text_middle=signature_total_mutations,
)
else:
custom_signatures_plot(processes, layer_directory + "/Signatures")
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6 changes: 3 additions & 3 deletions setup.py
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Expand Up @@ -6,7 +6,7 @@
if os.path.exists("dist"):
shutil.rmtree("dist")

VERSION = "0.1.4"
VERSION = "0.1.5"


def write_version_py(filename="SigProfilerAssignment/version.py"):
Expand All @@ -15,7 +15,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
# THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
short_version = '%(version)s'
version = '%(version)s'
Update = 'v0.1.4: Add SV decomposition plotting.'
Update = 'v0.1.5: Add text for stability and mutation count to the de novo signature plots.'


"""
Expand All @@ -37,7 +37,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
"numpy>=1.21.2",
"pandas>=1.2.4,<2.0.0",
"SigProfilerMatrixGenerator>=1.2.17",
"sigProfilerPlotting>=1.3.20",
"sigProfilerPlotting>=1.3.23",
"statsmodels>=0.9.0",
"scikit-learn>=0.24.2",
"psutil>=5.6.1",
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