phylodyn

The purpose of phylodyn is to facilitate phylodynamic inference and analysis in an approachable R package.

Installation

1. Install (if necessary) package dependencies and helpers ape, INLA, spam and devtools using install.packages.

2. Load devtools using library(devtools).

3. Install phylodyn using

   a. install_github("phylodyn", username="mdkarcher"), or

   b. install_github("phylodyn", username="mdkarcher", build_vignettes = TRUE) if you want some illustrative vignettes (note: using build_vignettes = TRUE will make the install take longer).