v0.19.3-beta

Changes include:

• remove bgzip for already-gzipped file in XfBatchEffect.GetFreqTable in #270
• Add subset ped step at start of CleanVcf in #250

Full Changelog: v0.19.2-beta...v0.19.3-beta

v0.19.2-beta

Updates include:

• Drop variants with NA scores in FilterBatchSites
• Efficiency fix for getting male-only variants on chrX in GenerateBatchMetrics
• Docker build updates

Full Changelog: v0.19.1-beta...v0.19.2-beta

v0.19.1-beta

Just #258: fix typo in runtime attributes in AnnotateVcf.wdl

v0.19-beta

Updates include:

• Clean up file headers
• Bug fix for handling male-only events on chrX in GenerateBatchMetrics (again)
• Expose runtime attributes in AnnotateVcf.wdl

Full Changelog: v0.18.5-beta...v0.19-beta

v0.18.5-beta

Updates include:

• Set MELT JVM memory based on machine memory available at runtime, so that out-of-memory issues can be resolved by increasing VM memory

v0.18.4-beta

Updates include:

• Add WDL for GangSTR
• Remove subprocesses in MakeRdTestBed in ClusterBatch for error propagation

v0.18.3-beta

Updates include:

• Expose runtime attributes for metrics workflows
• Replace nested scatter in TinyResolve with subworkflow
• Fix bug in GenerateBatchMetrics that may cause chrX events appearing only in males without read depth support to be filtered out

v0.18.2-beta

Hotfix to CleanVcf1_23 in MakeCohortVcf affecting cohorts with sex designations other than 1 or 2 in the ped file

v0.18.1-beta

Updates include:

• hotfix to handle empty EVIDENCE field in MakeCohortVcf
• add Terra pipeline diagram to Terra dashboard

v0.18-beta

Updates include:

• Super-scaling updates and fixes to MakeCohortVcf
• MiniWDL compatibility fixes
• Dynamic memory allocation for EvidenceQC.MedianCov
• Unique output filenames in a couple of workflows
• Documentation updates