fix: fruit fly RR genes (#1252)

chanzuckerberg · Feb 7, 2025 · 3107d81 · 3107d81
1 parent 241cefd
commit 3107d81
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/cellxgene_schema_cli/cellxgene_schema/gencode.py b/cellxgene_schema_cli/cellxgene_schema/gencode.py
@@ -46,7 +46,7 @@ def get_organism_from_feature_id(
         return SupportedOrganisms.SARS_COV_2
     elif feature_id.startswith("ERCC-"):
         return SupportedOrganisms.ERCC
-    elif feature_id.startswith("FB"):
+    elif feature_id.startswith("FB") or feature_id.startswith("RR"):
         return SupportedOrganisms.DROSOPHILA_MELANOGASTER
     elif feature_id.startswith("ENSDARG"):
         return SupportedOrganisms.DANIO_RERIO

diff --git a/cellxgene_schema_cli/tests/fixtures/examples_ontology_test.py b/cellxgene_schema_cli/tests/fixtures/examples_ontology_test.py
@@ -6,6 +6,8 @@
 valid_genes = {
     gencode.SupportedOrganisms.HOMO_SAPIENS: {"ENSG00000141510": ("TP53_ENSG00000141510", 2404)},
     gencode.SupportedOrganisms.MUS_MUSCULUS: {"ENSMUSG00000059552": ("Trp53", 1797)},
+    gencode.SupportedOrganisms.DROSOPHILA_MELANOGASTER: {"RR45003_transposable_element": ("S{}RR4500", 1234)},
+    gencode.SupportedOrganisms.DROSOPHILA_MELANOGASTER: {"FBgn0037293": ("RabGGTa", 1853)},
     gencode.SupportedOrganisms.CAENORHABDITIS_ELEGANS: {"WBGene00000003": ("aat-2", 1738)},
     gencode.SupportedOrganisms.CALLITHRIX_JACCHUS: {"ENSCJAG00000071296": ("U4_ENSCJAG00000071296", 141)},
     gencode.SupportedOrganisms.DANIO_RERIO: {"ENSDARG00000009657": ("fgfr1op2", 1088)},