new fix

grubaughlab · Jun 28, 2024 · 677d04d · 677d04d
1 parent 86c810c
commit 677d04d
Showing 1 changed file with 7 additions and 2 deletions.
diff --git a/denv_pipeline/scripts/make_summary_files.py b/denv_pipeline/scripts/make_summary_files.py
@@ -206,8 +206,13 @@ def pull_low_coverage_seqs(config, all_coverage, high_coverage):
                     lst.append(cov)
 
             in_order = sorted(lst, reverse=True)
-            if in_order[0] > (in_order[1] + 5):
-                top = [i for i in cov_dict if cov_dict[i]==in_order[0]][0]
+            if len(in_order) > 1:
+                if in_order[0] > (in_order[1] + 5):
+                    top = [i for i in cov_dict if cov_dict[i]==in_order[0]][0]
+                else:
+                    top = "NA"
+            elif len(in_order) == 1:
+                top = in_order[0]
             else:
                 top = "NA"