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0.2.4#776

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DominiqueMakowski merged 130 commits intomasterneuropsychology/NeuroKit:masterfrom devneuropsychology/NeuroKit:devCopy head branch name to clipboardApr 6, 2023

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Commits on Feb 9, 2023

• bump version (0.2.4)

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Commits on Feb 13, 2023

• remove appended zeros from last heartbeat

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• postprocess to remove indices larger than signal indices

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Commits on Feb 14, 2023

• pad last heartbeat with nan

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• change dataframe indexing

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Commits on Feb 16, 2023

• fix eda sympathetic index and add test

  

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• fix eda sympathetic index and add test

  

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• run test and pass

  

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• fix eda findpeaks with nabian2018 method

  

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• code check pass

  

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• docstrin test

  

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Commits on Feb 17, 2023

• Merge pull request #777 from danibene/fix/ecg_segment_extra_samples

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• Merge branch 'dev' into pr/783

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• mnor formatting + docstrings

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• Update ecg_segment.py

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• [breaking]: Use full names for features of eda_sympathetic

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• minor docstrings

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• fix tests

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• [Feature] refactor eda_intervalrelated

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• commit before fetching

  

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• solve conflict

  

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• fix vanhalem2020 find peaks methods

  

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Commits on Feb 18, 2023

• Add warning if < 60 s

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• style

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• Update NEWS.rst

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• maybe like that

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• 64 sec min instead of 60

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• Fixes #784 by having eda_simulate passing a random_state argument to signal_distort

  

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Commits on Feb 19, 2023

• np.max -> np.nanmax

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• fix test

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• add @GanshengT to contributor

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• fix zero crossing bugs

  

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• fix

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• Merge pull request #783 from GanshengT/fix_eda_scr_calculation

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Commits on Feb 20, 2023

• add interactive plot

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• add rsp_report

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• add test_rsp_report

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• import rsp_report

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• remove line renaming x axis before creating plot

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• format

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• remove commented out code

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• fix parameters for test_rsp_report

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• again fix parameters for test_rsp_report

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• fix number of parameters for test_rsp_report

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• only test valid peaks methods

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• test specific rvt methods

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• remove extra s from biosppy

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• sanitize extrema in scipy method

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• fix typo

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• Merge pull request #786 from danibene/fix/sanitize_rsp_peaks_scipy

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• Merge branch 'dev' into feature/rsp_plot_interactive

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• return a constant signal if interpolating only one value

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• generate x_new earlier in script

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• Merge pull request #787 from danibene/fix/signal_interpolate_one_value

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• Merge branch 'dev' into feature/rsp_plot_interactive

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• add autocor to intervalrelated

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Commits on Feb 21, 2023

• fix

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• Update eda_intervalrelated.py

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• Merge pull request #789 from neuropsychology/add_autocor_eda_intervalrelated

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• minor docs

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• update docs to rsp_process

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• replace _report files with general function in misc

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• fix typo in name of variable

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• fix import of create report

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• only generate figure if saving as html

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Commits on Feb 22, 2023

• add random state

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• change docs example

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• return fig regardless of whether plot is static

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• fix typo

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• add option for plotting with plotly

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• add matplotlib html export

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• import plotly and matplotlib

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• remove kwargs from plotting funcs

  danibene

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• let's see how the rendered docs look like with text report

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• Merge pull request #785 from danibene/feature/rsp_plot_interactive

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• Merge branch 'dev' into feature/eda_plot_interactive

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Commits on Feb 23, 2023

• add working plot

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• add methods file

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• update methods

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• add report option to eda_process

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• have interactive plot by default

  danibene

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• use rsp_peaks instead of rsp_findpeaks

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• generate report with interactive plot

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• add test for eda report

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• Merge pull request #791 from danibene/fix/report_methods

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• format

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• style

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• style again

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• revise error message

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• make order more consistent

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• add neurokit as equivalent to highpass for eda_phasic

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• ensure that filename is a string

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• Merge branch 'dev' into feature/eda_plot_interactive

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• return empty text if no rate cols

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• Merge branch 'feature/eda_plot_interactive' of https://github.com/danibene/NeuroKit into feature/eda_plot_interactive

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• iterate over peaks and half recovery separately from onset

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Commits on Feb 25, 2023

• Modified the approach to random number generation (also solving the issue that the same seed was used both to generate a signal and its noise).

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• Switched the default random_state_distort to "spawn". A small number of tests had to be modified.

  

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• Ran tools in https://github.com/neuropsychology/NeuroKit/blob/master/.github/CONTRIBUTING.rst#run-code-checks

  

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• Merge branch 'dev' into master

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• Fix error in _signal_distort_artifacts introduced by previous change

  

  Luca Citi

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• Added tests for kmeans and kmedoids (that had low coverage)

  

  Luca Citi

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Commits on Feb 26, 2023

• fix name of method_cleaning

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Commits on Mar 2, 2023

• add none option within cleaning functions

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Commits on Mar 3, 2023

• Fixed test_ppg_simulate_all_rng_types to test_rsp_simulate_all_rng_types

  

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Commits on Mar 7, 2023

• compute median diff between timestamps for plot

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• compute minimum frequency based on the median difference between timestamps

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Commits on Mar 9, 2023

• Update neurokit2/hrv/hrv_frequency.py

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• add comment with justification

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Commits on Mar 10, 2023

• Merge pull request #800 from danibene/fix/plot_lombscargle_uneven

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Commits on Mar 12, 2023

• Renamed get_rng to check_random_state for consistency with other packages (e.g. sk-learn, statsmodels, scipy)

  

  Luca Citi

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• Added documentation

  

  Luca Citi

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• Fixed error in example

  

  Luca Citi

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• Fixed error in example

  

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Commits on Mar 15, 2023

• Fixed issue with kmeans test failing with older versions of sk-learn

  

  Luca Citi

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• Fixed typo in comment

  

  Luca Citi

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Commits on Mar 19, 2023

• Merge pull request #793 from lciti/master

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Commits on Mar 24, 2023

• Merge pull request #792 from danibene/feature/eda_plot_interactive

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Commits on Mar 26, 2023

• minor docs

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Commits on Mar 29, 2023

• add facecolor argument

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• fix eda_clean for low sampling rates (#554)

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• Merge pull request #810 from the-visserd/fix_readme_facecolor

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Commits on Mar 30, 2023

• add angular entropy

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• Update entropy_angular.py

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• Merge pull request #811 from neuropsychology/feature_comEDA

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• Add sparsEDA

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• Update eda_phasic.py

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• Update eda_phasic.py

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Commits on Apr 2, 2023

• mention failed test

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• Merge pull request #812 from neuropsychology/feature_sparsEDA

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