Supporting downloading datasets not in manifest #345
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…e adapters Moves them closer to the actual Charon API request/response and makes the Resource/Dataset/Narrative model classes no longer tied to Charon's response format. The latter will be handy when manually instantiating them in another location outside of the current places in _ls(), but also make it easier when/if we move to another resource listing API.
… aren't in the manifest
This allows downloading of datasets like
https://nextstrain.org/enterovirus/d68/vp1/2020-01-23
https://nextstrain.org/nextclade/sars-cov-2/21L
and others, as reasonably expected.¹ It also will, with one more minor
tweak to follow, allow downloading of past snapshots of resources (e.g.
/zika@2023-01-01).
Switches from an assert on expected media type to a conditional
UserError, supported by the new Resource.__str__() method, since for
single resource downloads we no longer have the assurance of knowing it
exists already.
¹ <https://bedfordlab.slack.com/archives/C01LCTT7JNN/p1667970567194279>
…esources Using the same @YYYY-MM-DD suffix syntax as on the web. Support for this server-side is recently landed.¹ ¹ <nextstrain/nextstrain.org#719>
jameshadfield
approved these changes
Jan 18, 2024
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(Based upon #333 for less in-flight conflict.)
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