Skip to content

Commit

Permalink
fix: Add --cores all to rebuild-mpxv.yaml
Browse files Browse the repository at this point in the history
This is required for the action to be compatible with
snakemake version >5.11.0 which started to require the
`--cores` option
For more context see:
- nextstrain/cli#272
-https://bedfordlab.slack.com/archives/C01LCTT7JNN/p1681324279363569?thread_ts=1681293140.124269&cid=C01LCTT7JNN
  • Loading branch information
corneliusroemer authored Apr 12, 2023
1 parent 980d538 commit 5a869c0
Showing 1 changed file with 1 addition and 0 deletions.
1 change: 1 addition & 0 deletions .github/workflows/rebuild-mpxv.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,7 @@ jobs:
. \
envdir env.d snakemake notify_on_deploy \
--configfiles config/config_mpxv.yaml config/nextstrain_automation.yaml \
--cores all \
--printshellcmds
env:
AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }}
Expand Down

0 comments on commit 5a869c0

Please sign in to comment.