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[MRG] rename containment to contained_by #199

Merged
merged 52 commits into from
May 24, 2017
Merged

[MRG] rename containment to contained_by #199

merged 52 commits into from
May 24, 2017

Commits on Apr 17, 2017

  1. enrich -o output, provide column headers, eliminate --csv on sbt_gather

    @ctb
    ctb committed Apr 17, 2017
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  2. fix tests, add --save-matches test

    @ctb
    ctb committed Apr 17, 2017
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Commits on Apr 19, 2017

  1. simplify sbt_gather a bit by doing legacy hll compute in minhash max_… 

    …hash property
    @ctb
    ctb committed Apr 19, 2017
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  2. hackity hack add in downsample

    @ctb
    ctb committed Apr 19, 2017
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  3. Merge branch 'master' of github.com:dib-lab/sourmash into update/gath… 

    …er_out
    @ctb
    ctb committed Apr 19, 2017
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  4. add in containment

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    ctb committed Apr 19, 2017
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Commits on Apr 22, 2017

  1. fix legacy max_hash

    @ctb
    ctb committed Apr 22, 2017
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  2. fixed some super dumb errors in sourmash sbt_gather

    @ctb
    ctb committed Apr 22, 2017
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  3. fix print -> notify

    @ctb
    ctb committed Apr 22, 2017
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  4. fix notifications

    @ctb
    ctb committed Apr 22, 2017
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  5. matplotlib fix

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    ctb committed Apr 22, 2017
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Commits on Apr 23, 2017

  1. avoid printing out really large matrices

    @ctb
    ctb committed Apr 23, 2017
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Commits on Apr 24, 2017

  1. update output format

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    ctb committed Apr 24, 2017
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Commits on Apr 25, 2017

  1. Modify TOC depth

    @betatim
    betatim committed Apr 25, 2017
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Commits on Apr 26, 2017

  1. added scaled_to_max_hash function

    @ctb
    ctb committed Apr 26, 2017
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  2. updated output

    @ctb
    ctb committed Apr 26, 2017
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  3. Merge branch 'fix/sbt_search' into spacegraphcats

    @ctb
    ctb committed Apr 26, 2017
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Commits on May 2, 2017

  1. fix sbt_search --best-only

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  2. fix sbt_search --best-only

    @ctb
    ctb committed May 2, 2017
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  3. clean up sbt_search output a bit

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    ctb committed May 2, 2017
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  4. Merge branch 'fix/sbt_search' into spacegraphcats

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    ctb committed May 2, 2017
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Commits on May 4, 2017

  1. add scaled property to MinHashes

    @ctb
    ctb committed May 4, 2017
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  2. rename containment to contained_by

    @ctb
    ctb committed May 4, 2017
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Commits on May 14, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into fix/sbt_search

    @ctb
    ctb committed May 14, 2017
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  2. added test for search --containment

    @ctb
    ctb committed May 14, 2017
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  3. test similarity calculation with downsampling

    @ctb
    ctb committed May 14, 2017
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  4. rework sbt_search output a bit; test downsampling

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    ctb committed May 14, 2017
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  5. comment as to why output count changes

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    ctb committed May 14, 2017
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  6. Merge branch 'master' of github.com:dib-lab/sourmash into update/gath… 

    …er_out
    @ctb
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  7. get sbt_gather output to line up properly:

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    ctb committed May 14, 2017
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  8. Merge branch 'docs' of https://github.com/betatim/sourmash into updat… 

    …e/doc_sbts
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  9. fix up nav links to be a bit clearer

    @ctb
    ctb committed May 14, 2017
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  10. add link to databases; update requirements for markdown support

    @ctb
    ctb committed May 14, 2017
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  11. add a draft tutorial

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    ctb committed May 14, 2017
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  12. Merge branch 'update/gather_out' into spacegraphcats

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    ctb committed May 14, 2017
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  13. Merge branch 'fix/sbt_search' into spacegraphcats

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    ctb committed May 14, 2017
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  14. upd with data

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    ctb committed May 14, 2017
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  15. upd links/data

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    ctb committed May 14, 2017
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  16. update output

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    ctb committed May 14, 2017
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  17. whoops, forgot to add this :)

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    ctb committed May 14, 2017
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  18. whoops, forgot to add this :)

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    ctb committed May 14, 2017
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Commits on May 16, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into update/doc_… 

    …sbts
    @ctb
    ctb committed May 16, 2017
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  2. Merge branch 'master' of github.com:dib-lab/sourmash into fix/sbt_search

    @ctb
    ctb committed May 16, 2017
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  3. Merge branch 'master' of github.com:dib-lab/sourmash into update/gath… 

    …er_out
    @ctb
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  4. Merge branch 'update/gather_out' into spacegraphcats

    @ctb
    ctb committed May 16, 2017
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  5. Merge branch 'fix/sbt_search' into spacegraphcats

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    ctb committed May 16, 2017
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  6. Merge branch 'update/doc_sbts' into spacegraphcats

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    ctb committed May 16, 2017
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Commits on May 17, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into spacegraphcats

    @ctb
    ctb committed May 17, 2017
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  2. remove unneeded code (again)

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    ctb committed May 17, 2017
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Commits on May 21, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into spacegraphcats

    @ctb
    ctb committed May 21, 2017
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Commits on May 23, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into spacegraphcats

    @ctb
    ctb committed May 23, 2017
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Commits on May 24, 2017

  1. Merge branch 'master' into spacegraphcats

    @luizirber
    luizirber authored May 24, 2017
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