Brings bulk and pseudobulk transcriptomics to the tidyverse

Statistical Analysis of RNA-Seq Tools

This RNAseq data analysis tutorial is created for educational purpose

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

Probabilistic outlier identification for bulk RNA sequencing data

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)

Enhanced volcano plot using edgeR data

Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins

some scripts to process transcriptomics and Chip-seq data

Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Personalized, annotated code for anyone working with RNA-seq data.

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

Perform RNA-seq data analysis with edgeR package of bioconductor

Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.