Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets

Protein Language Model

ProtFlash: A lightweight protein language model

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

SaprotHub: Making Protein Modeling Accessible to All Biologists

Directed evolution of proteins in sequence space with gradients

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

Exploring Evolution-aware & free protein language models as protein function predictors

Inference code for PoET: A generative model of protein families as sequences-of-sequences

Detection of remote homology by comparison of protein language model representations

PaccMann models for protein language modeling

FAESM: A Drop-in Efficient Pytorch Implementation of ESM

Protein language model trained on coding DNA

MSAGPT

Spectral Framework For AI Model Evaluation

Latent-based Directed Evolution guided by Gradient Ascent for Protein Design

An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.

pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

AutoML system for building trustworthy peptide bioactivity predictors