chore: release

[github-actions]

🤖 New release

• htsget-config: 0.10.1 -> 0.11.0 (⚠️ API breaking changes)
• htsget-actix: 0.6.2 -> 0.7.0 (✓ API compatible changes)
• htsget-axum: 0.1.1 -> 0.2.0 (✓ API compatible changes)
• htsget-http: 0.4.16 -> 0.5.0 (✓ API compatible changes)
• htsget-search: 0.8.1 -> 0.9.0 (⚠️ API breaking changes)
• htsget-storage: 0.1.1 -> 0.2.0 (⚠️ API breaking changes)
• htsget-test: 0.6.2 -> 0.7.0 (⚠️ API breaking changes)
• htsget-lambda: 0.4.17 -> 0.5.0 (⚠️ API breaking changes)

⚠️ htsget-config breaking changes

--- failure enum_missing: pub enum removed or renamed ---

Description:
A publicly-visible enum cannot be imported by its prior path. A `pub use` may have been removed, or the enum itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/enum_missing.ron

Failed in:
  enum htsget_config::storage::TaggedStorageTypes, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/mod.rs:18

--- failure enum_variant_missing: pub enum variant removed or renamed ---

Description:
A publicly-visible enum has at least one variant that is no longer available under its prior name. It may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/enum_variant_missing.ron

Failed in:
  variant Storage::Tagged, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/mod.rs:54

--- failure inherent_method_missing: pub method removed or renamed ---

Description:
A publicly-visible method or associated fn is no longer available under its prior name. It may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/inherent_method_missing.ron

Failed in:
  Storage::resolve_local_storage, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/mod.rs:75
  Storage::resolve_s3_storage, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/mod.rs:87
  Storage::resolve_url_storage, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/mod.rs:106

--- failure struct_missing: pub struct removed or renamed ---

Description:
A publicly-visible struct cannot be imported by its prior path. A `pub use` may have been removed, or the struct itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/struct_missing.ron

Failed in:
  struct htsget_config::storage::s3::S3Storage, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/s3.rs:5
  struct htsget_config::storage::local::LocalStorage, previously in file /tmp/.tmpvQfTQx/htsget-config/src/storage/local.rs:20

⚠️ htsget-search breaking changes

--- failure auto_trait_impl_removed: auto trait no longer implemented ---

Description:
A public type has stopped implementing one or more auto traits. This can break downstream code that depends on the traits being implemented.
        ref: https://doc.rust-lang.org/reference/special-types-and-traits.html#auto-traits
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/auto_trait_impl_removed.ron

Failed in:
  type BcfSearch is no longer UnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/bcf_search.rs:25
  type BcfSearch is no longer RefUnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/bcf_search.rs:25
  type HtsGetFromStorage is no longer UnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/from_storage.rs:29
  type HtsGetFromStorage is no longer RefUnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/from_storage.rs:29
  type BamSearch is no longer UnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/bam_search.rs:28
  type BamSearch is no longer RefUnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/bam_search.rs:28
  type VcfSearch is no longer UnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/vcf_search.rs:29
  type VcfSearch is no longer RefUnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/vcf_search.rs:29
  type CramSearch is no longer UnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/cram_search.rs:39
  type CramSearch is no longer RefUnwindSafe, in /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/cram_search.rs:39

--- failure trait_method_added: pub trait method added ---

Description:
A non-sealed public trait added a new method without a default implementation, which breaks downstream implementations of the trait
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#trait-new-item-no-default
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/trait_method_added.ron

Failed in:
  trait method htsget_search::search::Search::mut_storage in file /tmp/.tmpSHCdnV/htsget-rs/htsget-search/src/search.rs:219

⚠️ htsget-storage breaking changes

--- failure enum_missing: pub enum removed or renamed ---

Description:
A publicly-visible enum cannot be imported by its prior path. A `pub use` may have been removed, or the enum itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/enum_missing.ron

Failed in:
  enum htsget_storage::StorageError, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:86
  enum htsget_storage::DataBlock, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:173

--- failure struct_missing: pub struct removed or renamed ---

Description:
A publicly-visible struct cannot be imported by its prior path. A `pub use` may have been removed, or the struct itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/struct_missing.ron

Failed in:
  struct htsget_storage::BytesRange, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:221
  struct htsget_storage::BytesPosition, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:213
  struct htsget_storage::HeadOptions, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:451
  struct htsget_storage::RangeUrlOptions, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:404
  struct htsget_storage::GetOptions, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:365

--- failure trait_missing: pub trait removed or renamed ---

Description:
A publicly-visible trait cannot be imported by its prior path. A `pub use` may have been removed, or the trait itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/trait_missing.ron

Failed in:
  trait htsget_storage::Storage, previously in file /tmp/.tmpvQfTQx/htsget-storage/src/lib.rs:40

⚠️ htsget-test breaking changes

--- failure function_missing: pub fn removed or renamed ---

Description:
A publicly-visible function cannot be imported by its prior path. A `pub use` may have been removed, or the function itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/function_missing.ron

Failed in:
  function htsget_test::http::default_dir, previously in file /tmp/.tmpvQfTQx/htsget-test/src/http/mod.rs:94
  function htsget_test::http::default_dir_data, previously in file /tmp/.tmpvQfTQx/htsget-test/src/http/mod.rs:102

--- failure trait_method_added: pub trait method added ---

Description:
A non-sealed public trait added a new method without a default implementation, which breaks downstream implementations of the trait
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#trait-new-item-no-default
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/trait_method_added.ron

Failed in:
  trait method htsget_test::http::TestServer::request in file /tmp/.tmpSHCdnV/htsget-rs/htsget-test/src/http/mod.rs:92

--- failure trait_method_missing: pub trait method removed or renamed ---

Description:
A trait method is no longer callable, and may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#major-any-change-to-trait-item-signatures
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/trait_method_missing.ron

Failed in:
  method get_request of trait TestServer, previously in file /tmp/.tmpvQfTQx/htsget-test/src/http/mod.rs:89

⚠️ htsget-lambda breaking changes

--- failure enum_missing: pub enum removed or renamed ---

Description:
A publicly-visible enum cannot be imported by its prior path. A `pub use` may have been removed, or the enum itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/enum_missing.ron

Failed in:
  enum htsget_lambda::RouteType, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/lib.rs:46
  enum htsget_lambda::HtsgetMethod, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/lib.rs:39

--- failure function_missing: pub fn removed or renamed ---

Description:
A publicly-visible function cannot be imported by its prior path. A `pub use` may have been removed, or the function itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/function_missing.ron

Failed in:
  function htsget_lambda::handlers::service_info::get_service_info_json, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/service_info.rs:16
  function htsget_lambda::handle_request, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/lib.rs:252
  function htsget_lambda::handlers::post::post, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/post.rs:17
  function htsget_lambda::handlers::get::get, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/get.rs:17
  function htsget_lambda::handle_request_service_fn, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/lib.rs:236

--- failure module_missing: pub module removed or renamed ---

Description:
A publicly-visible module cannot be imported by its prior path. A `pub use` may have been removed, or the module may have been renamed, removed, or made non-public.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/module_missing.ron

Failed in:
  mod htsget_lambda::handlers::service_info, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/service_info.rs:1
  mod htsget_lambda::handlers::post, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/post.rs:1
  mod htsget_lambda::handlers::get, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/get.rs:1
  mod htsget_lambda::handlers, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/mod.rs:1

--- failure struct_missing: pub struct removed or renamed ---

Description:
A publicly-visible struct cannot be imported by its prior path. A `pub use` may have been removed, or the struct itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.35.0/src/lints/struct_missing.ron

Failed in:
  struct htsget_lambda::Router, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/lib.rs:136
  struct htsget_lambda::Route, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/lib.rs:31
  struct htsget_lambda::handlers::FormatJson, previously in file /tmp/.tmpvQfTQx/htsget-lambda/src/handlers/mod.rs:19

Changelog

htsget-config

0.11.0 - 2024-09-30

Added

• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Fixed

• explicitly choose aws_lc_rs as the crypto provider

Other

• (deps) bump noodles and tower
• remove ObjectType in favour of a more flattened config hierarchy
• rename type to backend and clarify experimental feature flag
• (config) slight adjustment to reduce conditionally compiled code branches
• [breaking] make storage config more explicit
• (config) [breaking] remove object type and specify keys directly
• bump noodles and other dependencies
• [breaking] rename c4gh-experimental to experimental
• add more server tests and fix Dockerfile.dockerignore

htsget-actix

0.7.0 - 2024-09-30

Added

• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Fixed

• explicitly choose aws_lc_rs as the crypto provider

Other

• rename type to backend and clarify experimental feature flag
• [breaking] rename c4gh-experimental to experimental
• [breaking] allow mutable search trait, use way less Arcs and clones
• Merge pull request #259 from umccr/release-plz-2024-09-03T01-36-36Z
• [breaking] remove htsget-lambda library code and replace with axum router

htsget-http

0.5.0 - 2024-09-30

Added

• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Other

• remove ObjectType in favour of a more flattened config hierarchy
• rename type to backend and clarify experimental feature flag
• [breaking] make storage config more explicit
• [breaking] rename c4gh-experimental to experimental
• [breaking] allow mutable search trait, use way less Arcs and clones

htsget-search

0.9.0 - 2024-09-30

Added

• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Other

• (deps) bump noodles and tower
• remove ObjectType in favour of a more flattened config hierarchy
• rename type to backend and clarify experimental feature flag
• [breaking] make storage config more explicit
• bump noodles and other dependencies
• [breaking] rename c4gh-experimental to experimental
• [breaking] split out storage lib.rs into another types.rs module
• (storage) use preprocess and postprocess for C4GH storage instead of Arc<Mutex<..>>
• [breaking] allow mutable search trait, use way less Arcs and clones

htsget-storage

0.2.0 - 2024-09-30

Added

• (storage) allow S3 and Url storage to use C4GHStorage
• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Fixed

• (storage) make overflow handling more robust
• build errors with conditional flags

Other

• (deps) bump noodles and tower
• remove ObjectType in favour of a more flattened config hierarchy
• rename type to backend and clarify experimental feature flag
• (config) slight adjustment to reduce conditionally compiled code branches
• [breaking] make storage config more explicit
• (config) [breaking] remove object type and specify keys directly
• [breaking] rename c4gh-experimental to experimental
• [breaking] split out storage lib.rs into another types.rs module
• (storage) add c4gh storage tests
• (storage) use preprocess and postprocess for C4GH storage instead of Arc<Mutex<..>>
• [breaking] allow mutable search trait, use way less Arcs and clones

htsget-test

0.7.0 - 2024-09-30

Added

• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Other

• (deps) bump noodles and tower
• remove ObjectType in favour of a more flattened config hierarchy
• rename type to backend and clarify experimental feature flag
• [breaking] make storage config more explicit
• bump noodles and other dependencies
• [breaking] rename c4gh-experimental to experimental
• (storage) add c4gh storage tests
• add more server tests and fix Dockerfile.dockerignore
• [breaking] remove htsget-lambda library code and replace with axum router

htsget-lambda

0.5.0 - 2024-09-30

Added

• (config) add configuration values for C4GH S3 and Url storage
• Crypt4GH support using LocalStorage

Fixed

• explicitly choose aws_lc_rs as the crypto provider

Other

• (deps) bump noodles and tower
• rename type to backend and clarify experimental feature flag
• [breaking] rename c4gh-experimental to experimental
• Merge pull request #259 from umccr/release-plz-2024-09-03T01-36-36Z
• add more server tests and fix Dockerfile.dockerignore
• [breaking] remove htsget-lambda library code and replace with axum router

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This PR was generated with release-plz.