umccr · brainstorm · Oct 4, 2024 · Sep 30, 2024
diff --git a/Cargo.lock b/Cargo.lock
diff --git a/htsget-actix/CHANGELOG.md b/htsget-actix/CHANGELOG.md
@@ -6,6 +6,25 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.7.0](https://github.com/umccr/htsget-rs/compare/htsget-actix-v0.6.2...htsget-actix-v0.7.0) - 2024-09-30
+
+### Added
+
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Fixed
+
+- explicitly choose aws_lc_rs as the crypto provider
+
+### Other
+
+- rename type to backend and clarify experimental feature flag
+- [**breaking**] rename c4gh-experimental to experimental
+- [**breaking**] allow mutable search trait, use way less Arcs and clones
+- Merge pull request [#259](https://github.com/umccr/htsget-rs/pull/259) from umccr/release-plz-2024-09-03T01-36-36Z
+- [**breaking**] remove htsget-lambda library code and replace with axum router
+
 ## [0.6.2](https://github.com/umccr/htsget-rs/compare/htsget-actix-v0.6.1...htsget-actix-v0.6.2) - 2024-08-04
 
 ### Added

diff --git a/htsget-actix/Cargo.toml b/htsget-actix/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-actix"
-version = "0.6.2"
+version = "0.7.0"
 rust-version = "1.75"
 authors = ["Daniel del Castillo de la Rosa <[email protected]>", "Marko Malenic <[email protected]>", "Roman Valls Guimera <[email protected]>"]
 edition = "2021"
@@ -38,11 +38,11 @@ tokio = { version = "1", features = ["macros", "rt-multi-thread"] }
 tracing-actix-web = "0.7"
 tracing = "0.1"
 
-htsget-http = { version = "0.4.16", path = "../htsget-http", default-features = false }
-htsget-search = { version = "0.8.1", path = "../htsget-search", default-features = false }
-htsget-config = { version = "0.10.1", path = "../htsget-config", default-features = false }
-htsget-test = { version = "0.6.2", path = "../htsget-test", features = ["http"], default-features = false }
-htsget-axum = { version = "0.1.1", path = "../htsget-axum", default-features = false }
+htsget-http = { version = "0.5.0", path = "../htsget-http", default-features = false }
+htsget-search = { version = "0.9.0", path = "../htsget-search", default-features = false }
+htsget-config = { version = "0.11.0", path = "../htsget-config", default-features = false }
+htsget-test = { version = "0.7.0", path = "../htsget-test", features = ["http"], default-features = false }
+htsget-axum = { version = "0.2.0", path = "../htsget-axum", default-features = false }
 
 [dev-dependencies]
 async-trait = "0.1"

diff --git a/htsget-axum/CHANGELOG.md b/htsget-axum/CHANGELOG.md
@@ -6,6 +6,26 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.2.0](https://github.com/umccr/htsget-rs/compare/htsget-axum-v0.1.1...htsget-axum-v0.2.0) - 2024-09-30
+
+### Added
+
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Fixed
+
+- explicitly choose aws_lc_rs as the crypto provider
+
+### Other
+
+- *(deps)* bump noodles and tower
+- rename type to backend and clarify experimental feature flag
+- bump noodles and other dependencies
+- [**breaking**] rename c4gh-experimental to experimental
+- [**breaking**] allow mutable search trait, use way less Arcs and clones
+- add example on how to use Crypt4GH with the htsget-rs server
+
 ## [0.1.1](https://github.com/umccr/htsget-rs/compare/htsget-axum-v0.1.0...htsget-axum-v0.1.1) - 2024-09-03
 
 ### Other

diff --git a/htsget-axum/Cargo.toml b/htsget-axum/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-axum"
-version = "0.1.1"
+version = "0.2.0"
 rust-version = "1.75"
 authors = ["Marko Malenic <[email protected]>"]
 edition = "2021"
@@ -53,10 +53,10 @@ async-trait = "0.1"
 thiserror = "1"
 tracing = "0.1"
 
-htsget-config = { version = "0.10.1", path = "../htsget-config", default-features = false }
-htsget-test = { version = "0.6.2", path = "../htsget-test", features = ["http"], default-features = false }
-htsget-search = { version = "0.8.1", path = "../htsget-search", default-features = false }
-htsget-http = { version = "0.4.16", path = "../htsget-http", default-features = false }
+htsget-config = { version = "0.11.0", path = "../htsget-config", default-features = false }
+htsget-test = { version = "0.7.0", path = "../htsget-test", features = ["http"], default-features = false }
+htsget-search = { version = "0.9.0", path = "../htsget-search", default-features = false }
+htsget-http = { version = "0.5.0", path = "../htsget-http", default-features = false }
 
 [dev-dependencies]
 tempfile = "3"

diff --git a/htsget-config/CHANGELOG.md b/htsget-config/CHANGELOG.md
@@ -6,6 +6,29 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.11.0](https://github.com/umccr/htsget-rs/compare/htsget-config-v0.10.1...htsget-config-v0.11.0) - 2024-09-30
+
+### Added
+
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Fixed
+
+- explicitly choose aws_lc_rs as the crypto provider
+
+### Other
+
+- *(deps)* bump noodles and tower
+- remove `ObjectType` in favour of a more flattened config hierarchy
+- rename type to backend and clarify experimental feature flag
+- *(config)* slight adjustment to reduce conditionally compiled code branches
+- [**breaking**] make storage config more explicit
+- *(config)* [**breaking**] remove object type and specify keys directly
+- bump noodles and other dependencies
+- [**breaking**] rename c4gh-experimental to experimental
+- add more server tests and fix Dockerfile.dockerignore
+
 ## [0.10.1](https://github.com/umccr/htsget-rs/compare/htsget-config-v0.10.0...htsget-config-v0.10.1) - 2024-08-04
 
 ### Fixed

diff --git a/htsget-config/Cargo.toml b/htsget-config/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-config"
-version = "0.10.1"
+version = "0.11.0"
 rust-version = "1.75"
 authors = ["Daniel del Castillo de la Rosa <[email protected]>", "Marko Malenic <[email protected]>", "Roman Valls Guimera <[email protected]>"]
 edition = "2021"

diff --git a/htsget-http/CHANGELOG.md b/htsget-http/CHANGELOG.md
@@ -6,6 +6,21 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.5.0](https://github.com/umccr/htsget-rs/compare/htsget-http-v0.4.16...htsget-http-v0.5.0) - 2024-09-30
+
+### Added
+
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Other
+
+- remove `ObjectType` in favour of a more flattened config hierarchy
+- rename type to backend and clarify experimental feature flag
+- [**breaking**] make storage config more explicit
+- [**breaking**] rename c4gh-experimental to experimental
+- [**breaking**] allow mutable search trait, use way less Arcs and clones
+
 ## [0.4.16](https://github.com/umccr/htsget-rs/compare/htsget-http-v0.4.15...htsget-http-v0.4.16) - 2024-09-03
 
 ### Other

diff --git a/htsget-http/Cargo.toml b/htsget-http/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-http"
-version = "0.4.16"
+version = "0.5.0"
 rust-version = "1.75"
 authors = ["Daniel del Castillo de la Rosa <[email protected]>", "Marko Malenic <[email protected]>", "Roman Valls Guimera <[email protected]>"]
 edition = "2021"
@@ -20,9 +20,9 @@ default = []
 thiserror = "1"
 serde = { version = "1", features = ["derive"] }
 http = "1"
-htsget-search = { version = "0.8.1", path = "../htsget-search", default-features = false }
-htsget-config = { version = "0.10.1", path = "../htsget-config", default-features = false }
-htsget-test = { version = "0.6.2", path = "../htsget-test", default-features = false }
+htsget-search = { version = "0.9.0", path = "../htsget-search", default-features = false }
+htsget-config = { version = "0.11.0", path = "../htsget-config", default-features = false }
+htsget-test = { version = "0.7.0", path = "../htsget-test", default-features = false }
 futures = { version = "0.3" }
 tokio = { version = "1", features = ["macros", "rt-multi-thread"] }
 tracing = "0.1"
diff --git a/htsget-lambda/CHANGELOG.md b/htsget-lambda/CHANGELOG.md
@@ -6,6 +6,26 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.5.0](https://github.com/umccr/htsget-rs/compare/htsget-lambda-v0.4.17...htsget-lambda-v0.5.0) - 2024-09-30
+
+### Added
+
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Fixed
+
+- explicitly choose aws_lc_rs as the crypto provider
+
+### Other
+
+- *(deps)* bump noodles and tower
+- rename type to backend and clarify experimental feature flag
+- [**breaking**] rename c4gh-experimental to experimental
+- Merge pull request [#259](https://github.com/umccr/htsget-rs/pull/259) from umccr/release-plz-2024-09-03T01-36-36Z
+- add more server tests and fix Dockerfile.dockerignore
+- [**breaking**] remove htsget-lambda library code and replace with axum router
+
 ## [0.4.17](https://github.com/umccr/htsget-rs/compare/htsget-lambda-v0.4.16...htsget-lambda-v0.4.17) - 2024-08-04
 
 ### Other

diff --git a/htsget-lambda/Cargo.toml b/htsget-lambda/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-lambda"
-version = "0.4.17"
+version = "0.5.0"
 rust-version = "1.75"
 authors = ["Marko Malenic <[email protected]>", "Roman Valls Guimera <[email protected]>"]
 edition = "2021"
@@ -36,11 +36,11 @@ tracing = "0.1"
 tracing-subscriber = "0.3"
 bytes = "1"
 
-htsget-config = { version = "0.10.1", path = "../htsget-config", default-features = false }
-htsget-search = { version = "0.8.1", path = "../htsget-search", default-features = false }
-htsget-http = { version = "0.4.16", path = "../htsget-http", default-features = false }
-htsget-test = { version = "0.6.2", path = "../htsget-test", features = ["http"], default-features = false }
-htsget-axum = { version = "0.1.1", path = "../htsget-axum", default-features = false }
+htsget-config = { version = "0.11.0", path = "../htsget-config", default-features = false }
+htsget-search = { version = "0.9.0", path = "../htsget-search", default-features = false }
+htsget-http = { version = "0.5.0", path = "../htsget-http", default-features = false }
+htsget-test = { version = "0.7.0", path = "../htsget-test", features = ["http"], default-features = false }
+htsget-axum = { version = "0.2.0", path = "../htsget-axum", default-features = false }
 
 [dev-dependencies]
 async-trait = "0.1"

diff --git a/htsget-search/CHANGELOG.md b/htsget-search/CHANGELOG.md
@@ -6,6 +6,25 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.9.0](https://github.com/umccr/htsget-rs/compare/htsget-search-v0.8.1...htsget-search-v0.9.0) - 2024-09-30
+
+### Added
+
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Other
+
+- *(deps)* bump noodles and tower
+- remove `ObjectType` in favour of a more flattened config hierarchy
+- rename type to backend and clarify experimental feature flag
+- [**breaking**] make storage config more explicit
+- bump noodles and other dependencies
+- [**breaking**] rename c4gh-experimental to experimental
+- [**breaking**] split out storage lib.rs into another types.rs module
+- *(storage)* use preprocess and postprocess for C4GH storage instead of Arc<Mutex<..>>
+- [**breaking**] allow mutable search trait, use way less Arcs and clones
+
 ## [0.8.1](https://github.com/umccr/htsget-rs/compare/htsget-search-v0.8.0...htsget-search-v0.8.1) - 2024-09-03
 
 ### Other

diff --git a/htsget-search/Cargo.toml b/htsget-search/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-search"
-version = "0.8.1"
+version = "0.9.0"
 rust-version = "1.75"
 authors = ["Christian Perez Llamas <[email protected]>", "Marko Malenic <[email protected]>", "Roman Valls Guimera <[email protected]>"]
 edition = "2021"
@@ -43,9 +43,9 @@ noodles = { version = "0.83", features = ["async", "core", "bgzf", "bam", "bcf",
 thiserror = "1"
 tracing = "0.1"
 
-htsget-config = { version = "0.10.1", path = "../htsget-config", default-features = false }
-htsget-storage = { version = "0.1.1", path = "../htsget-storage", default-features = false }
-htsget-test = { version = "0.6.2", path = "../htsget-test", features = ["http"], default-features = false }
+htsget-config = { version = "0.11.0", path = "../htsget-config", default-features = false }
+htsget-storage = { version = "0.2.0", path = "../htsget-storage", default-features = false }
+htsget-test = { version = "0.7.0", path = "../htsget-test", features = ["http"], default-features = false }
 
 [dev-dependencies]
 tempfile = "3"

diff --git a/htsget-storage/CHANGELOG.md b/htsget-storage/CHANGELOG.md
@@ -6,6 +6,33 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.2.0](https://github.com/umccr/htsget-rs/compare/htsget-storage-v0.1.1...htsget-storage-v0.2.0) - 2024-09-30
+
+### Added
+
+- *(storage)* allow S3 and Url storage to use C4GHStorage
+- *(config)* add configuration values for C4GH S3 and Url storage
+- Crypt4GH support using LocalStorage
+
+### Fixed
+
+- *(storage)* make overflow handling more robust
+- build errors with conditional flags
+
+### Other
+
+- *(deps)* bump noodles and tower
+- remove `ObjectType` in favour of a more flattened config hierarchy
+- rename type to backend and clarify experimental feature flag
+- *(config)* slight adjustment to reduce conditionally compiled code branches
+- [**breaking**] make storage config more explicit
+- *(config)* [**breaking**] remove object type and specify keys directly
+- [**breaking**] rename c4gh-experimental to experimental
+- [**breaking**] split out storage lib.rs into another types.rs module
+- *(storage)* add c4gh storage tests
+- *(storage)* use preprocess and postprocess for C4GH storage instead of Arc<Mutex<..>>
+- [**breaking**] allow mutable search trait, use way less Arcs and clones
+
 ## [0.1.1](https://github.com/umccr/htsget-rs/compare/htsget-storage-v0.1.0...htsget-storage-v0.1.1) - 2024-08-05
 
 ### Other